bend-prot

Search uses release 0.1.0.0 · 623 definitions

Releases (1)

0.1.0.0 indexed

Definitions (623)

templates.bend

def tpl_ASP_atoms--- ASP: 16 atoms, 15 bonds.
def tpl_ASP_bonds
def tpl_CYS_atoms--- CYS: 14 atoms, 13 bonds.
def tpl_CYS_bonds
def tpl_GLN_atoms--- GLN: 20 atoms, 19 bonds.
def tpl_GLN_bonds
def tpl_GLU_atoms--- GLU: 19 atoms, 18 bonds.
def tpl_GLU_bonds
def tpl_GLY_atoms--- GLY: 10 atoms, 9 bonds.
def tpl_GLY_bonds
def tpl_HIS_atoms--- HIS: 21 atoms, 21 bonds.
def tpl_HIS_bonds
def tpl_ILE_atoms--- ILE: 22 atoms, 21 bonds.
def tpl_ILE_bonds
def tpl_LEU_atoms--- LEU: 22 atoms, 21 bonds.
def tpl_LEU_bonds
def tpl_LYS_atoms--- LYS: 25 atoms, 24 bonds.
def tpl_LYS_bonds
def tpl_MET_atoms--- MET: 20 atoms, 19 bonds.
def tpl_MET_bonds
def tpl_PHE_atoms--- PHE: 23 atoms, 23 bonds.
def tpl_PHE_bonds
def tpl_PRO_atoms--- PRO: 17 atoms, 17 bonds.
def tpl_PRO_bonds
def tpl_SER_atoms--- SER: 14 atoms, 13 bonds.
def tpl_SER_bonds
def tpl_THR_atoms--- THR: 17 atoms, 16 bonds.
def tpl_THR_bonds
def tpl_TRP_atoms--- TRP: 27 atoms, 28 bonds.
def tpl_TRP_bonds
def tpl_TYR_atoms--- TYR: 24 atoms, 24 bonds.
def tpl_TYR_bonds
def tpl_VAL_atoms--- VAL: 19 atoms, 18 bonds.
def tpl_VAL_bonds
def tpl_atoms_HIP
def tpl_atoms_HID
def tpl_atoms_HIE
def tpl_atoms_VAL
def tpl_atoms_TYR
def tpl_atoms_TRP
def tpl_atoms_THR
def tpl_atoms_SER
def tpl_atoms_PRO
def tpl_atoms_PHE
def tpl_atoms_MET
def tpl_atoms_LYS
def tpl_atoms_LEU
def tpl_atoms_ILE
def tpl_atoms_HIS
def tpl_atoms_GLY
def tpl_atoms_GLU
def tpl_atoms_GLN
def tpl_atoms_CYS
def tpl_atoms_ASP
def tpl_atoms_ASN
def tpl_atoms_ARG
def tpl_atoms_ALA
def tpl_atoms_for
def tpl_bonds_HIP
def tpl_bonds_HID
def tpl_bonds_HIE
def tpl_bonds_VAL
def tpl_bonds_TYR
def tpl_bonds_TRP
def tpl_bonds_THR
def tpl_bonds_SER
def tpl_bonds_PRO
def tpl_bonds_PHE
def tpl_bonds_MET
def tpl_bonds_LYS
def tpl_bonds_LEU
def tpl_bonds_ILE
def tpl_bonds_HIS
def tpl_bonds_GLY
def tpl_bonds_GLU
def tpl_bonds_GLN
def tpl_bonds_CYS
def tpl_bonds_ASP
def tpl_bonds_ASN
def tpl_bonds_ARG
def tpl_bonds_ALA
def tpl_bonds_for

topology.bend

def hit_nat_go
def head_hit_nat
def count_below
def count_withinPlain (non-squared) cutoff: squares it once, then counts.
def head_is_close
def has_close
def head_dist2
def sum_dist2
def sumd2_extend
def sumd2_countOne pass: summed squared distances about qp, plus atom count.
def rg_of_go
def rg_of
def rg_aboutRadius of gyration of an atom list about a given center.
def contacts_of_head
def contacts_betweenInterface size: pairs (x in xs, y in ys) with dist2 < c2.
def min_cons_go
def min_cons
def min_dist2_toClosest squared distance from qp to any atom in xs.